Tutorial

Contents:

• Quickstart
  • Step 1. Generating Scaffold
  • Step 2. Simulate scTCR-Seq Data
  • Step 3. Simulate scRNA-Seq Data
• Simulating scRNA-Seq Data using Seurat and scDesign2
  • Downloading Raw Data
  • Quality Control
  • Fitting and Simulation using scDesign2
  • Writing the Simulated Data to Disk
• Reproducibility Guide on Building References
  • Making the Reference Transcriptome
  • Constructing the TCR Cache